{
  "_id": "6a216169cd65a98ecbd31b4a",
  "Package": "palaeoverse",
  "Title": "Prepare and Explore Data for Palaeobiological Analyses",
  "Version": "1.4.0.9000",
  "Authors@R": "c(\nperson(given = \"Lewis A.\", family = \"Jones\", email = \"LewisA.Jones@outlook.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3902-8986\")),\nperson(given = \"William\", family = \"Gearty\", email = \"willgearty@gmail.com\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0003-0076-3262\")),\nperson(given = \"Bethany J.\", family = \"Allen\", email = \"Bethany.Allen@bsse.ethz.ch\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0003-0282-6407\")),\nperson(given = \"Kilian\", family = \"Eichenseer\", email = \"kilian.eichenseer@gmail.com\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0002-0477-8878\")),\nperson(given = \"Christopher D.\", family = \"Dean\", email = \"christopherdaviddean@gmail.com\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0001-6471-6903\")),\nperson(given = \"Sofia\", family = \"Galvan\", email = \"sofia.galvan@uvigo.es\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0002-3092-4314\")),\nperson(given = \"Miranta\", family = \"Kouvari\", email = \"m.kouvari@ucl.ac.uk\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0002-5442-6221\")),\nperson(given = \"Pedro L.\", family = \"Godoy\", email = \"pedrolorenagodoy@gmail.com\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0003-4519-5094\")),\nperson(given = \"Cecily\", family = \"Nicholl\", email = \"cecily.nicholl@ucl.ac.uk\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0003-2860-2604\")),\nperson(given = \"Lucas\", family = \"Buffan\", email = \"lucas.l.buffan@gmail.com\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0002-2353-1432\")),\nperson(given = \"Erin M.\", family = \"Dillon\", email = \"emdillon23@gmail.com\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0003-0249-027X\")),\nperson(given = \"Joseph T.\", family = \"Flannery-Sutherland\", email = \"jf15558@bristol.ac.uk\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0001-8232-6773\")),\nperson(given = \"A. Alessandro\", family = \"Chiarenza\", email = \"a.chiarenza15@gmail.com\",\nrole = c(\"ctb\"), comment = c(ORCID = \"0000-0001-5525-6730\")))",
  "Description": "Provides functionality to support data preparation and\nexploration for palaeobiological analyses, improving code\nreproducibility and accessibility. The wider aim of\n'palaeoverse' is to bring the palaeobiological community\ntogether to establish agreed standards. The package currently\nincludes functionality for data cleaning, binning (time and\nspace), exploration, summarisation and visualisation. Reference\ndatasets (i.e. Geological Time Scales\n<https://stratigraphy.org/chart>) and auxiliary functions are\nalso provided. Details can be found in: Jones et al., (2023)\n<doi: 10.1111/2041-210X.14099>.",
  "License": "GPL (>= 3)",
  "Language": "en-GB",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/testthat/parallel": "true",
  "URL": "https://palaeoverse.palaeoverse.org,\nhttps://github.com/palaeoverse/palaeoverse,\nhttps://palaeoverse.org",
  "BugReports": "https://github.com/palaeoverse/palaeoverse/issues",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev libnode-dev",
  "Repository": "https://palaeoverse.r-universe.dev",
  "Date/Publication": "2026-06-04 09:20:21 UTC",
  "RemoteUrl": "https://github.com/palaeoverse/palaeoverse",
  "RemoteRef": "HEAD",
  "RemoteSha": "736e97adbe218fd5c816a32ee484a60a0e4845e7",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 11:11:30 UTC",
    "User": "root"
  },
  "Author": "Lewis A. Jones [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3902-8986>),\nWilliam Gearty [aut] (ORCID: <https://orcid.org/0000-0003-0076-3262>),\nBethany J. Allen [aut] (ORCID: <https://orcid.org/0000-0003-0282-6407>),\nKilian Eichenseer [aut] (ORCID:\n<https://orcid.org/0000-0002-0477-8878>),\nChristopher D. Dean [aut] (ORCID:\n<https://orcid.org/0000-0001-6471-6903>),\nSofia Galvan [ctb] (ORCID: <https://orcid.org/0000-0002-3092-4314>),\nMiranta Kouvari [ctb] (ORCID: <https://orcid.org/0000-0002-5442-6221>),\nPedro L. Godoy [ctb] (ORCID: <https://orcid.org/0000-0003-4519-5094>),\nCecily Nicholl [ctb] (ORCID: <https://orcid.org/0000-0003-2860-2604>),\nLucas Buffan [ctb] (ORCID: <https://orcid.org/0000-0002-2353-1432>),\nErin M. Dillon [ctb] (ORCID: <https://orcid.org/0000-0003-0249-027X>),\nJoseph T. Flannery-Sutherland [aut] (ORCID:\n<https://orcid.org/0000-0001-8232-6773>),\nA. Alessandro Chiarenza [ctb] (ORCID:\n<https://orcid.org/0000-0001-5525-6730>)",
  "Maintainer": "Lewis A. Jones <LewisA.Jones@outlook.com>",
  "MD5sum": "b73bbbeb15837cfdd1d7a8ebf894f7b3",
  "_user": "palaeoverse",
  "_type": "src",
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  "_created": "2026-06-04T11:11:30.000Z",
  "_published": "2026-06-04T11:28:41.711Z",
  "_distro": "noble",
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  "_buildurl": "https://github.com/r-universe/palaeoverse/actions/runs/26947988046",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/palaeoverse/palaeoverse",
  "_commit": {
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    "author": "Etienne Bacher <52219252+etiennebacher@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Fix column order in `group_apply()` (#198)",
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    "name": "Lewis A. Jones",
    "email": "lewisa.jones@outlook.com",
    "login": "lewisajones",
    "twitter": "@LewisAlanJones",
    "description": "Palaeobiologist examining in the macroecological and macroevolutionary history of reef-building organisms and developing tools for the community @palaeoverse. ",
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  "_topics": [
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    "fossil",
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    "name": "Palaeoverse",
    "description": "A Resource Hub for Palaeobiologists"
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  "_pkgdown": "https://palaeoverse.palaeoverse.org",
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
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  "_homeurl": "https://github.com/palaeoverse/palaeoverse",
  "_realowner": "palaeoverse",
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  "_releases": [
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      "date": "2022-10-31"
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      "date": "2024-04-16"
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    "axis_geo",
    "axis_geo_phylo",
    "bin_lat",
    "bin_space",
    "bin_time",
    "group_apply",
    "lat_bins",
    "lat_bins_area",
    "lat_bins_degrees",
    "look_up",
    "palaeorotate",
    "phylo_check",
    "tax_certainty",
    "tax_check",
    "tax_expand_lat",
    "tax_expand_time",
    "tax_range_space",
    "tax_range_strat",
    "tax_range_time",
    "tax_unique",
    "time_bins"
  ],
  "_datasets": [
    {
      "name": "GTS2012",
      "title": "Geological Timescale 2012",
      "object": "GTS2012",
      "class": [
        "data.frame"
      ],
      "fields": [
        "interval_number",
        "interval_name",
        "rank",
        "max_ma",
        "mid_ma",
        "min_ma",
        "duration_myr",
        "font",
        "colour",
        "abbr"
      ],
      "rows": 186,
      "table": true,
      "tojson": true
    },
    {
      "name": "GTS2020",
      "title": "Geological Timescale 2020",
      "object": "GTS2020",
      "class": [
        "data.frame"
      ],
      "fields": [
        "interval_number",
        "interval_name",
        "rank",
        "max_ma",
        "mid_ma",
        "min_ma",
        "duration_myr",
        "font",
        "colour",
        "abbr"
      ],
      "rows": 189,
      "table": true,
      "tojson": true
    },
    {
      "name": "interval_key",
      "title": "Example dataset: Interval key for the look_up function",
      "object": "interval_key",
      "class": [
        "data.frame"
      ],
      "fields": [
        "interval_name",
        "early_stage",
        "late_stage"
      ],
      "rows": 1323,
      "table": true,
      "tojson": true
    },
    {
      "name": "reefs",
      "title": "Example dataset: Phanerozoic reefs from the PaleoReefs Database",
      "object": "reefs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "r_number",
        "name",
        "formation",
        "system",
        "series",
        "interval",
        "biota_main",
        "biota_sec",
        "lng",
        "lat",
        "country",
        "authors",
        "title",
        "year"
      ],
      "rows": 4363,
      "table": true,
      "tojson": true
    },
    {
      "name": "tetrapods",
      "title": "Example dataset: Early tetrapod data from the Paleobiology Database",
      "object": "tetrapods",
      "class": [
        "data.frame"
      ],
      "fields": [
        "occurrence_no",
        "collection_no",
        "identified_name",
        "identified_rank",
        "accepted_name",
        "accepted_rank",
        "early_interval",
        "late_interval",
        "max_ma",
        "min_ma",
        "phylum",
        "class",
        "order",
        "family",
        "genus",
        "abund_value",
        "abund_unit",
        "lng",
        "lat",
        "collection_name",
        "cc",
        "formation",
        "stratgroup",
        "member",
        "zone",
        "lithology1",
        "environment",
        "pres_mode",
        "taxon_environment",
        "motility",
        "life_habit",
        "diet"
      ],
      "rows": 5270,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "axis_geo",
      "title": "Add an axis with a geological timescale",
      "topics": [
        "axis_geo",
        "axis_geo_phylo"
      ]
    },
    {
      "page": "bin_lat",
      "title": "Assign fossil occurrences to latitudinal bins",
      "topics": [
        "bin_lat"
      ]
    },
    {
      "page": "bin_space",
      "title": "Assign fossil occurrences to spatial bins",
      "topics": [
        "bin_space"
      ]
    },
    {
      "page": "bin_time",
      "title": "Assign fossil occurrences to time bins",
      "topics": [
        "bin_time"
      ]
    },
    {
      "page": "group_apply",
      "title": "Apply a function over grouping(s) of data",
      "topics": [
        "group_apply"
      ]
    },
    {
      "page": "GTS2012",
      "title": "Geological Timescale 2012",
      "topics": [
        "GTS2012"
      ]
    },
    {
      "page": "GTS2020",
      "title": "Geological Timescale 2020",
      "topics": [
        "GTS2020"
      ]
    },
    {
      "page": "interval_key",
      "title": "Example dataset: Interval key for the look_up function",
      "topics": [
        "interval_key"
      ]
    },
    {
      "page": "lat_bins",
      "title": "Generate equal-width latitudinal bins",
      "topics": [
        "lat_bins"
      ]
    },
    {
      "page": "lat_bins_area",
      "title": "Generate equal-area latitudinal bins",
      "topics": [
        "lat_bins_area"
      ]
    },
    {
      "page": "lat_bins_degrees",
      "title": "Generate equal-width latitudinal bins",
      "topics": [
        "lat_bins_degrees"
      ]
    },
    {
      "page": "look_up",
      "title": "Look up geological intervals and assign geological stages",
      "topics": [
        "look_up"
      ]
    },
    {
      "page": "palaeorotate",
      "title": "Palaeorotate fossil occurrences",
      "topics": [
        "palaeorotate"
      ]
    },
    {
      "page": "phylo_check",
      "title": "Check phylogeny tip names",
      "topics": [
        "phylo_check"
      ]
    },
    {
      "page": "reefs",
      "title": "Example dataset: Phanerozoic reefs from the PaleoReefs Database",
      "topics": [
        "reefs"
      ]
    },
    {
      "page": "tax_certainty",
      "title": "Classify the certainty of taxonomic identifications",
      "topics": [
        "tax_certainty"
      ]
    },
    {
      "page": "tax_check",
      "title": "Taxonomic spell check",
      "topics": [
        "tax_check"
      ]
    },
    {
      "page": "tax_expand_lat",
      "title": "Generate pseudo-occurrences from latitudinal range data",
      "topics": [
        "tax_expand_lat"
      ]
    },
    {
      "page": "tax_expand_time",
      "title": "Generate pseudo-occurrences from temporal range data",
      "topics": [
        "tax_expand_time"
      ]
    },
    {
      "page": "tax_range_space",
      "title": "Calculate the geographic range of fossil taxa",
      "topics": [
        "tax_range_space"
      ]
    },
    {
      "page": "tax_range_strat",
      "title": "Generate a stratigraphic section plot",
      "topics": [
        "tax_range_strat"
      ]
    },
    {
      "page": "tax_range_time",
      "title": "Calculate the temporal range of fossil taxa",
      "topics": [
        "tax_range_time"
      ]
    },
    {
      "page": "tax_unique",
      "title": "Filter occurrences to unique taxa",
      "topics": [
        "tax_unique"
      ]
    },
    {
      "page": "tetrapods",
      "title": "Example dataset: Early tetrapod data from the Paleobiology Database",
      "topics": [
        "tetrapods"
      ]
    },
    {
      "page": "time_bins",
      "title": "Generate time bins",
      "topics": [
        "time_bins"
      ]
    }
  ],
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