Package: palaeoverse 1.5.0.9000

Lewis A. Jones

palaeoverse: Prepare and Explore Data for Palaeobiological Analyses

Provides functionality to support data preparation and exploration for palaeobiological analyses, improving code reproducibility and accessibility. The wider aim of 'palaeoverse' is to bring the palaeobiological community together to establish agreed standards. The package currently includes functionality for data cleaning, binning (time and space), exploration, summarisation and visualisation. Reference datasets (i.e. Geological Time Scales <https://stratigraphy.org/chart/>) and auxiliary functions are also provided. Details can be found in: Jones et al., (2023) <doi:10.1111/2041-210X.14099>.

Authors:Lewis A. Jones [aut, cre], William Gearty [aut], Bethany J. Allen [aut], Kilian Eichenseer [aut], Christopher D. Dean [aut], Etienne Bacher [aut], Joseph T. Flannery-Sutherland [aut], Sofia Galvan [ctb], Miranta Kouvari [ctb], Pedro L. Godoy [ctb], Cecily Nicholl [ctb], Lucas Buffan [ctb], Erin M. Dillon [ctb], A. Alessandro Chiarenza [ctb]

palaeoverse_1.5.0.9000.tar.gz
palaeoverse_1.5.0.9000.zip(r-4.7-any)palaeoverse_1.5.0.9000.zip(r-4.6-any)palaeoverse_1.5.0.9000.zip(r-4.5-any)
palaeoverse_1.5.0.9000.tgz(r-4.6-any)palaeoverse_1.5.0.9000.tgz(r-4.5-any)
palaeoverse_1.5.0.9000.tar.gz(r-4.7-any)palaeoverse_1.5.0.9000.tar.gz(r-4.6-any)
palaeoverse_1.5.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
palaeoverse/json (API)

# Install 'palaeoverse' in R:
install.packages('palaeoverse', repos = c('https://palaeoverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/palaeoverse/palaeoverse/issues

Pkgdown/docs site:https://palaeoverse.palaeoverse.org

Datasets:
  • GTS2012 - Geological Timescale 2012
  • GTS2020 - Geological Timescale 2020
  • interval_key - Example dataset: Interval key for the look_up function
  • reefs - Example dataset: Phanerozoic reefs from the PaleoReefs Database
  • tetrapods - Example dataset: Early tetrapod data from the Paleobiology Database

On CRAN:

Conda:

biodiversityfossilpalaeobiologypaleobiology

9.63 score 29 stars 1 packages 141 scripts 498 downloads 22 exports 52 dependencies

Last updated from:ae3aef6dc2. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develNOTE201
source / vignettesOK387
linux-releaseNOTE194
macos-releaseNOTE173
macos-oldrelNOTE132
windows-develNOTE164
windows-releaseNOTE151
windows-oldrelNOTE167
wasm-releaseOK129

Exports:axis_geoaxis_geo_phylobin_latbin_spacebin_timegroup_applylat_binslat_bins_arealat_bins_degreeslook_uppalaeorotatephylo_checkspace_binstax_certaintytax_checktax_expand_lattax_expand_timetax_range_spacetax_range_strattax_range_timetax_uniquetime_bins

Dependencies:apeaskpassclassclassIntclicpp11curlDBIdigestdplyre1071genericsgeojsonsfgeometriesgeosphereglueh3jsrhttrjsonifyjsonliteKernSmoothlatticelifecyclemagrittrmimenlmeopensslpbapplypillarpkgconfigproxypurrrR6rapidjsonrRcpprlangs2sfsfheadersstringdiststringistringrsystibbletidyrtidyselectunitsutf8V8vctrswithrwk

Alpha diversity and geographic range size of Carboniferous and Permian tetrapods
Introduction | Installation | Now that that's out of the way, let's begin! | The Tetrapods Dataset | Exploring the functions | Unique taxa and alpha diversity | Exploring range size/spatial issues through time | References
Rendered fromtetrapod-biodiversity.Rmdusingknitr::rmarkdown

Last update: 2026-10-19
Started: 2023-04-17

Contributing to palaeoverse: structure and standards
Introduction | Files | R style guide | Data | Raw data | Internal data | Exported data | External data | Data documentation | What does it mean to document your data? | Functions | Conventions | Documentation | Efficiency | Error messages | Warning messages | Tests | Contributing to palaeoverse | Git and GitHub | How to contribute | Minor changes | Substantial changes | Pull request process | Code review
Rendered fromstructure-and-standards.Rmdusingknitr::rmarkdown

Last update: 2026-07-21
Started: 2022-10-11

Latitudinal trends in Phanerozoic reefs
Introduction | Installation | Using the package | Let's begin! | References
Rendered fromphanerozoic-reefs.Rmdusingknitr::rmarkdown

Last update: 2026-07-02
Started: 2023-04-17