Package: palaeoverse 1.5.0.9000

Lewis A. Jones

palaeoverse: Prepare and Explore Data for Palaeobiological Analyses

Provides functionality to support data preparation and exploration for palaeobiological analyses, improving code reproducibility and accessibility. The wider aim of 'palaeoverse' is to bring the palaeobiological community together to establish agreed standards. The package currently includes functionality for data cleaning, binning (time and space), exploration, summarisation and visualisation. Reference datasets (i.e. Geological Time Scales <https://stratigraphy.org/chart/>) and auxiliary functions are also provided. Details can be found in: Jones et al., (2023) <doi:10.1111/2041-210X.14099>.

Authors:Lewis A. Jones [aut, cre], William Gearty [aut], Bethany J. Allen [aut], Kilian Eichenseer [aut], Christopher D. Dean [aut], Etienne Bacher [aut], Joseph T. Flannery-Sutherland [aut], Sofia Galvan [ctb], Miranta Kouvari [ctb], Pedro L. Godoy [ctb], Cecily Nicholl [ctb], Lucas Buffan [ctb], Erin M. Dillon [ctb], A. Alessandro Chiarenza [ctb]

palaeoverse_1.5.0.9000.tar.gz
palaeoverse_1.5.0.9000.zip(r-4.7)palaeoverse_1.5.0.9000.zip(r-4.6)palaeoverse_1.5.0.9000.zip(r-4.5)
palaeoverse_1.5.0.9000.tgz(r-4.6-any)palaeoverse_1.5.0.9000.tgz(r-4.5-any)
palaeoverse_1.5.0.9000.tar.gz(r-4.7-any)palaeoverse_1.5.0.9000.tar.gz(r-4.6-any)
palaeoverse_1.5.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
palaeoverse/json (API)

# Install 'palaeoverse' in R:
install.packages('palaeoverse', repos = c('https://palaeoverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/palaeoverse/palaeoverse/issues

Pkgdown/docs site:https://palaeoverse.palaeoverse.org

Datasets:
  • GTS2012 - Geological Timescale 2012
  • GTS2020 - Geological Timescale 2020
  • interval_key - Example dataset: Interval key for the look_up function
  • reefs - Example dataset: Phanerozoic reefs from the PaleoReefs Database
  • tetrapods - Example dataset: Early tetrapod data from the Paleobiology Database

On CRAN:

Conda:

biodiversityfossilpalaeobiologypaleobiology

9.39 score 29 stars 1 packages 138 scripts 539 downloads 21 exports 53 dependencies

Last updated from:a368860589. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK215
source / vignettesOK269
linux-release-x86_64OK245
macos-release-arm64OK143
macos-oldrel-arm64OK117
windows-develOK165
windows-releaseOK161
windows-oldrelOK145
wasm-releaseOK150

Exports:axis_geoaxis_geo_phylobin_latbin_spacebin_timegroup_applylat_binslat_bins_arealat_bins_degreeslook_uppalaeorotatephylo_checktax_certaintytax_checktax_expand_lattax_expand_timetax_range_spacetax_range_strattax_range_timetax_uniquetime_bins

Dependencies:apeaskpassclassclassIntclicpp11curlDBIdigestdplyre1071genericsgeojsonsfgeometriesgeosphereglueh3jsrhttrjsonifyjsonliteKernSmoothlatticelifecyclemagrittrMASSmimenlmeopensslpbapplypillarpkgconfigproxypurrrR6rapidjsonrRcpprlangs2sfsfheadersstringdiststringistringrsystibbletidyrtidyselectunitsutf8V8vctrswithrwk

Alpha diversity and geographic range size of Carboniferous and Permian tetrapods
Introduction | Installation | Now that that's out of the way, let's begin! | The Tetrapods Dataset | Exploring the functions | Unique taxa and alpha diversity | Exploring range size/spatial issues through time | References
Rendered fromtetrapod-biodiversity.Rmdusingknitr::rmarkdown

Last update: 2026-07-02
Started: 2023-04-17

Latitudinal trends in Phanerozoic reefs
Introduction | Installation | Using the package | Let's begin! | References
Rendered fromphanerozoic-reefs.Rmdusingknitr::rmarkdown

Last update: 2026-07-02
Started: 2023-04-17

Contributing to palaeoverse: structure and standards
Introduction | Files | R style guide | Data | Raw data | Internal data | Exported data | External data | Data documentation | What does it mean to document your data? | Functions | Conventions | Documentation | Efficiency | Error messages | Warning messages | Tests | Contributing to palaeoverse | Git and GitHub | How to contribute | Minor changes | Substantial changes | Pull request process | Code review
Rendered fromstructure-and-standards.Rmdusingknitr::rmarkdown

Last update: 2026-05-21
Started: 2022-10-11