Package: palaeoverse 1.3.0

Lewis A. Jones

palaeoverse: Prepare and Explore Data for Palaeobiological Analyses

Provides functionality to support data preparation and exploration for palaeobiological analyses, improving code reproducibility and accessibility. The wider aim of 'palaeoverse' is to bring the palaeobiological community together to establish agreed standards. The package currently includes functionality for data cleaning, binning (time and space), exploration, summarisation and visualisation. Reference datasets (i.e. Geological Time Scales <https://stratigraphy.org/chart>) and auxiliary functions are also provided. Details can be found in: Jones et al., (2023) <doi:10.1111/2041-210X.14099>.

Authors:Lewis A. Jones [aut, cre], William Gearty [aut], Bethany J. Allen [aut], Kilian Eichenseer [aut], Christopher D. Dean [aut], Sofia Galvan [ctb], Miranta Kouvari [ctb], Pedro L. Godoy [ctb], Cecily Nicholl [ctb], Lucas Buffan [ctb], Erin M. Dillon [ctb], Joseph T. Flannery-Sutherland [aut], A. Alessandro Chiarenza [ctb]

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palaeoverse.pdf |palaeoverse.html✨
palaeoverse/json (API)
NEWS

# Install 'palaeoverse' in R:
install.packages('palaeoverse', repos = c('https://palaeoverse.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/palaeoverse/palaeoverse/issues

Datasets:
  • GTS2012 - Geological Timescale 2012
  • GTS2020 - Geological Timescale 2020
  • interval_key - Example dataset: Interval key for the look_up function
  • reefs - Example dataset: Phanerozoic reefs from the PaleoReefs Database
  • tetrapods - Example dataset: Early tetrapod data from the Paleobiology Database

On CRAN:

biodiversityfossilpalaeobiologypaleobiology

18 exports 19 stars 2.69 score 55 dependencies 38 scripts 516 downloads

Last updated 2 months agofrom:02b350c1ae. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 23 2024
R-4.5-winNOTEAug 23 2024
R-4.5-linuxNOTEAug 23 2024
R-4.4-winNOTEAug 23 2024
R-4.4-macNOTEAug 23 2024
R-4.3-winNOTEAug 23 2024
R-4.3-macNOTEAug 23 2024

Exports:axis_geoaxis_geo_phylobin_latbin_spacebin_timegroup_applylat_binslook_uppalaeorotatephylo_checktax_checktax_expand_lattax_expand_timetax_range_spacetax_range_strattax_range_timetax_uniquetime_bins

Dependencies:apeaskpassclassclassIntclicpp11curlDBIdigestdplyre1071fansigenericsgeojsonsfgeometriesgeosphereglueh3jsrhttrjsonifyjsonliteKernSmoothlatticelifecyclemagrittrMASSmimenlmeopensslpbapplypillarpkgconfigproxypurrrR6rapidjsonrRcpprlangs2sfsfheadersspstringdiststringistringrsystibbletidyrtidyselectunitsutf8V8vctrswithrwk

Alpha diversity and geographic range size of Carboniferous and Permian tetrapods

Rendered fromtetrapod-biodiversity.Rmdusingknitr::rmarkdownon Aug 23 2024.

Last update: 2024-04-16
Started: 2023-04-17

Contributing to palaeoverse: structure and standards

Rendered fromstructure-and-standards.Rmdusingknitr::rmarkdownon Aug 23 2024.

Last update: 2023-12-04
Started: 2022-10-11

Latitudinal trends in Phanerozoic reefs

Rendered fromphanerozoic-reefs.Rmdusingknitr::rmarkdownon Aug 23 2024.

Last update: 2024-04-16
Started: 2023-04-17